From f032e0aba46133bdb2c180b084af83e266256462 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Sun, 12 Aug 2012 13:45:52 -0400
Subject: [PATCH] A bit better output for ContextCovariate context size logging

---
 .../sting/utils/recalibration/covariates/ContextCovariate.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java b/public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java
index 13ea0f0b3..570944245 100644
--- a/public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java
+++ b/public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java
@@ -66,7 +66,7 @@ public class ContextCovariate implements StandardCovariate {
         mismatchesContextSize = RAC.MISMATCHES_CONTEXT_SIZE;
         indelsContextSize = RAC.INDELS_CONTEXT_SIZE;
 
-        logger.info("Context sizes: base substitution model " + mismatchesContextSize + ", indel substitution model " + indelsContextSize);
+        logger.info("\t\tContext sizes: base substitution model " + mismatchesContextSize + ", indel substitution model " + indelsContextSize);
 
         if (mismatchesContextSize > MAX_DNA_CONTEXT)
             throw new UserException.BadArgumentValue("mismatches_context_size", String.format("context size cannot be bigger than %d, but was %d", MAX_DNA_CONTEXT, mismatchesContextSize));