Fix MD5 because of a need to fix a busted bam file in our validation directory (it used the wrong quality score encoding...)
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@ -437,7 +437,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
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public void testNsInCigar() {
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WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
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"-T UnifiedGenotyper -R " + b37KGReference + " --no_cmdline_in_header -I " + validationDataLocation + "testWithNs.bam -o %s -L 8:141799600-141814700", 1,
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Arrays.asList("bd7984a374f0ae5d277bd5fc5065f64f"));
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Arrays.asList("f388d2ebb05e7269e7f0a7e9b8d2dbaa"));
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executeTest("test calling on reads with Ns in CIGAR", spec);
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}
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