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Rev Picard to 1.107.1683 (4 jars)

This commit is contained in:
Joel Thibault 2014-02-12 13:37:29 -05:00
parent cc9477aedb
commit ef87b051b0
9 changed files with 11 additions and 11 deletions
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public/repo/net/sf/picard/1.107.1676/picard-1.107.1676.jar → public/repo/net/sf/picard/1.107.1683/picard-1.107.1683.jar
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8
public/repo/net/sf/picard/1.107.1676/picard-1.107.1676.pom → public/repo/net/sf/picard/1.107.1683/picard-1.107.1683.pom
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@ -3,23 +3,23 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>net.sf</groupId> <groupId>net.sf</groupId>
<artifactId>picard</artifactId> <artifactId>picard</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
<name>picard</name> <name>picard</name>
<dependencies> <dependencies>
<dependency> <dependency>
<groupId>net.sf</groupId> <groupId>net.sf</groupId>
<artifactId>sam</artifactId> <artifactId>sam</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.broadinstitute</groupId> <groupId>org.broadinstitute</groupId>
<artifactId>variant</artifactId> <artifactId>variant</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.broad</groupId> <groupId>org.broad</groupId>
<artifactId>tribble</artifactId> <artifactId>tribble</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
</dependency> </dependency>
<!-- TODO: Picard is using a custom zip with just ant's BZip2 classes. See also: http://www.kohsuke.org/bzip2 --> <!-- TODO: Picard is using a custom zip with just ant's BZip2 classes. See also: http://www.kohsuke.org/bzip2 -->
<dependency> <dependency>

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public/repo/net/sf/sam/1.107.1676/sam-1.107.1676.jar → public/repo/net/sf/sam/1.107.1683/sam-1.107.1683.jar
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public/repo/net/sf/sam/1.107.1676/sam-1.107.1676.pom → public/repo/net/sf/sam/1.107.1683/sam-1.107.1683.pom
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@ -3,7 +3,7 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>net.sf</groupId> <groupId>net.sf</groupId>
<artifactId>sam</artifactId> <artifactId>sam</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
<name>sam-jdk</name> <name>sam-jdk</name>
<dependencies> <dependencies>
<dependency> <dependency>

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public/repo/org/broad/tribble/1.107.1676/tribble-1.107.1676.jar → public/repo/org/broad/tribble/1.107.1683/tribble-1.107.1683.jar
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4
public/repo/org/broad/tribble/1.107.1676/tribble-1.107.1676.pom → public/repo/org/broad/tribble/1.107.1683/tribble-1.107.1683.pom
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@ -3,13 +3,13 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>org.broad</groupId> <groupId>org.broad</groupId>
<artifactId>tribble</artifactId> <artifactId>tribble</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
<name>tribble</name> <name>tribble</name>
<dependencies> <dependencies>
<dependency> <dependency>
<groupId>net.sf</groupId> <groupId>net.sf</groupId>
<artifactId>sam</artifactId> <artifactId>sam</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
</dependency> </dependency>
</dependencies> </dependencies>
</project> </project>

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public/repo/org/broadinstitute/variant/1.107.1676/variant-1.107.1676.jar → public/repo/org/broadinstitute/variant/1.107.1683/variant-1.107.1683.jar
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6
public/repo/org/broadinstitute/variant/1.107.1676/variant-1.107.1676.pom → public/repo/org/broadinstitute/variant/1.107.1683/variant-1.107.1683.pom
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@ -3,18 +3,18 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>org.broadinstitute</groupId> <groupId>org.broadinstitute</groupId>
<artifactId>variant</artifactId> <artifactId>variant</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
<name>variant</name> <name>variant</name>
<dependencies> <dependencies>
<dependency> <dependency>
<groupId>org.broad</groupId> <groupId>org.broad</groupId>
<artifactId>tribble</artifactId> <artifactId>tribble</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>net.sf</groupId> <groupId>net.sf</groupId>
<artifactId>sam</artifactId> <artifactId>sam</artifactId>
<version>1.107.1676</version> <version>1.107.1683</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.apache.commons</groupId> <groupId>org.apache.commons</groupId>

2
public/sting-root/pom.xml
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@ -40,7 +40,7 @@
<test.args>-Xmx${test.maxmemory}</test.args> <test.args>-Xmx${test.maxmemory}</test.args>
<!-- Version numbers for picard sam-jdk. Usually kept in sync. --> <!-- Version numbers for picard sam-jdk. Usually kept in sync. -->
<picard.public.version>1.107.1676</picard.public.version> <picard.public.version>1.107.1683</picard.public.version>
<sam.version>${picard.public.version}</sam.version> <sam.version>${picard.public.version}</sam.version>
<picard.version>${picard.public.version}</picard.version> <picard.version>${picard.public.version}</picard.version>
<variant.version>${picard.public.version}</variant.version> <variant.version>${picard.public.version}</variant.version>