From ef6d900eb8cbb7cd74596eb9dabc4fb338ea8ae3 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 21 Apr 2010 19:21:06 +0000
Subject: [PATCH] for now, set log error to -1

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3231 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/genotyper/SimpleIndelCalculationModel.java     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java
index c41f4c835..aad911231 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java
@@ -75,7 +75,7 @@ public class SimpleIndelCalculationModel extends GenotypeCalculationModel {
         }
 
         VariantContext vc = new VariantContext("UG_Indel_call", loc, alleles, new HashMap<String,Genotype>() /* genotypes */,
-                0.0 /* log error */, null /* filters */, null /* attributes */);
+                -1.0 /* log error */, null /* filters */, null /* attributes */);
 
         vcc = new VariantCallContext(vc,true);
 /*