diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java index c41f4c835..aad911231 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/SimpleIndelCalculationModel.java @@ -75,7 +75,7 @@ public class SimpleIndelCalculationModel extends GenotypeCalculationModel { } VariantContext vc = new VariantContext("UG_Indel_call", loc, alleles, new HashMap() /* genotypes */, - 0.0 /* log error */, null /* filters */, null /* attributes */); + -1.0 /* log error */, null /* filters */, null /* attributes */); vcc = new VariantCallContext(vc,true); /*