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Fixing BQSR gatherer test to keep up to date with latest changes

This commit is contained in:
Eric Banks 2013-01-06 14:07:59 -05:00
parent ea21dc9cfb
commit ef638489d5
1 changed files with 3 additions and 2 deletions
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5
public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java
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@ -42,7 +42,6 @@ public class BQSRGathererUnitTest extends BaseTest {
GATKReport originalReport = new GATKReport(recal_original); GATKReport originalReport = new GATKReport(recal_original);
GATKReport calculatedReport = new GATKReport(output); GATKReport calculatedReport = new GATKReport(output);
// test the Arguments table // test the Arguments table
List<String> columnsToTest = Arrays.asList(RecalUtils.ARGUMENT_COLUMN_NAME, RecalUtils.ARGUMENT_VALUE_COLUMN_NAME); List<String> columnsToTest = Arrays.asList(RecalUtils.ARGUMENT_COLUMN_NAME, RecalUtils.ARGUMENT_VALUE_COLUMN_NAME);
GATKReportTable originalTable = originalReport.getTable(RecalUtils.ARGUMENT_REPORT_TABLE_TITLE); GATKReportTable originalTable = originalReport.getTable(RecalUtils.ARGUMENT_REPORT_TABLE_TITLE);
@ -86,7 +85,9 @@ public class BQSRGathererUnitTest extends BaseTest {
for (String column : columnsToTest) { for (String column : columnsToTest) {
Object actual = calculated.get(new Integer(row), column); Object actual = calculated.get(new Integer(row), column);
Object expected = original.get(row, column); Object expected = original.get(row, column);
Assert.assertEquals(actual, expected, "Row: " + row + " Original Table: " + original.getTableName() + " Calc Table: " + calculated.getTableName()); //if ( !actual.equals(expected) )
// System.out.println("Row=" + row + " Table=" + original.getTableName() + " Column=" + column + " Expected=" + expected + " Actual=" + actual);
Assert.assertEquals(actual, expected, "Row: " + row + " Original Table: " + original.getTableName() + " Column=" + column);
} }
} }