From ef638489d52ecfc95812bf11f9fb0134c967111b Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Sun, 6 Jan 2013 14:07:59 -0500 Subject: [PATCH] Fixing BQSR gatherer test to keep up to date with latest changes --- .../sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java index 220ffa1e1..44bc7de5f 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java @@ -42,7 +42,6 @@ public class BQSRGathererUnitTest extends BaseTest { GATKReport originalReport = new GATKReport(recal_original); GATKReport calculatedReport = new GATKReport(output); - // test the Arguments table List columnsToTest = Arrays.asList(RecalUtils.ARGUMENT_COLUMN_NAME, RecalUtils.ARGUMENT_VALUE_COLUMN_NAME); GATKReportTable originalTable = originalReport.getTable(RecalUtils.ARGUMENT_REPORT_TABLE_TITLE); @@ -86,7 +85,9 @@ public class BQSRGathererUnitTest extends BaseTest { for (String column : columnsToTest) { Object actual = calculated.get(new Integer(row), column); Object expected = original.get(row, column); - Assert.assertEquals(actual, expected, "Row: " + row + " Original Table: " + original.getTableName() + " Calc Table: " + calculated.getTableName()); + //if ( !actual.equals(expected) ) + // System.out.println("Row=" + row + " Table=" + original.getTableName() + " Column=" + column + " Expected=" + expected + " Actual=" + actual); + Assert.assertEquals(actual, expected, "Row: " + row + " Original Table: " + original.getTableName() + " Column=" + column); } }