diff --git a/public/java/src/org/broadinstitute/sting/utils/sam/AlignmentStartWithNoTiesComparator.java b/public/java/src/org/broadinstitute/sting/utils/sam/AlignmentStartWithNoTiesComparator.java index 02512c8dc..682c76617 100644 --- a/public/java/src/org/broadinstitute/sting/utils/sam/AlignmentStartWithNoTiesComparator.java +++ b/public/java/src/org/broadinstitute/sting/utils/sam/AlignmentStartWithNoTiesComparator.java @@ -36,8 +36,10 @@ public class AlignmentStartWithNoTiesComparator implements Comparator result = cmpContig; else { - if (r1.getAlignmentStart() < r2.getAlignmentStart()) result = -1; - else result = 1; + if (r1.getAlignmentStart() < r2.getAlignmentStart()) + result = -1; + else + result = 1; } }