diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AssessSimulatedPerformance.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AssessSimulatedPerformance.java index a0d0a0f4d..844a16c3b 100755 --- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AssessSimulatedPerformance.java +++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/AssessSimulatedPerformance.java @@ -86,7 +86,7 @@ public class AssessSimulatedPerformance extends RodWalker { private void printVCFields(String name, RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) { VariantContext vc = tracker.getVariantContext(ref, name, null, context.getLocation(), true); - out.print(Utils.join("\t", VariantsToTable.extractFields(vc, fieldsToTake))); + out.print(Utils.join("\t", VariantsToTable.extractFields(vc, fieldsToTake, true))); out.print("\t"); }