From 66cbaaee3127317739f993afb3bbce2782bdf717 Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Fri, 9 Nov 2012 08:33:55 -0500
Subject: [PATCH] Fixed nasty bug in BQSR csv file creation: numbers larger
 than 999 in the Errors column were printed out with commas (which looks like
 a separate column).

This wasn't caught earlier because there are no integration tests covering the csv.  I'll add one into unstable in a sec.
---
 .../broadinstitute/sting/utils/recalibration/RecalDatum.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java b/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java
index e3348d3de..207988749 100755
--- a/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java
+++ b/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java
@@ -199,7 +199,7 @@ public class RecalDatum {
 
     @Override
     public String toString() {
-        return String.format("%.2f,%,2f,%.2f", getNumObservations(), getNumMismatches(), getEmpiricalQuality());
+        return String.format("%.2f,%.2f,%.2f", getNumObservations(), getNumMismatches(), getEmpiricalQuality());
     }
 
     public String stringForCSV() {