From ee3f2eb1d08058210df21ef88a87ab7b1081355e Mon Sep 17 00:00:00 2001 From: hanna Date: Sun, 23 May 2010 22:41:43 +0000 Subject: [PATCH] Don't output traversal reduce result in the logger. In many cases, the reduce result is tangential to the product of the analysis and having the logger always emit it can confuse the output (such as in the new reduceByInterval DepthOfCoverage walker). If users want to emit it, they can choose not override onTraversalDone, or override onTraversalDone and write results to the output stream / logger / whatever their choice. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3422 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/gatk/traversals/TraversalEngine.java | 1 - 1 file changed, 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java index bc9e72738..e31f7d3d5 100755 --- a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java +++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java @@ -86,7 +86,6 @@ public abstract class TraversalEngine,Provide */ protected void printOnTraversalDone(final String type, T sum) { printProgress(true, type, null); - logger.info("Traversal reduce result is " + sum); final long curTime = System.currentTimeMillis(); final double elapsed = (curTime - startTime) / 1000.0; logger.info(String.format("Total runtime %.2f secs, %.2f min, %.2f hours%n", elapsed, elapsed / 60, elapsed / 3600));