Updates to ReduceReads

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* Turn off the post-downsampler by default until new implementation.
   * optimized read clipping in consensus regions -- only clip once instead of every time the window slides.
   * extracted HeaderElement into it's own class.
   * moved RFA to archive
   * unified the context size of indels and mismatches

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This commit is contained in:

Mauricio Carneiro 2012-05-03 12:23:49 -04:00

parent afa9b2718a

commit edf08ca928

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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