From ed9b7edee3a04454d4183b5166978baaae652f05 Mon Sep 17 00:00:00 2001 From: chartl Date: Wed, 27 Jan 2010 15:23:55 +0000 Subject: [PATCH] Changed " to ' to stop the [javadoc] /humgen/gsa-scr1/chartl/sting/java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java:99: warning: unmappable character for encoding ASCII [javadoc] * if one of the alleles is deleted (?-?). warnings on compile. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2703 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/oneoffprojects/variantcontext/VariantContext.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java b/java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java index c9e56742a..0fc9727aa 100755 --- a/java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java +++ b/java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java @@ -94,9 +94,9 @@ public class VariantContext { * * Deletion/Insertion Polymorphisms (DIPs) * Designated using the full sequence of the insertion as one allele, and either a fully - * defined string for the variant allele or a Ò-Ó character to specify the deleted allele. + * defined string for the variant allele or a '-' character to specify the deleted allele. * This class will be assigned to a variation if the variation alleles are of different lengths or - * if one of the alleles is deleted (Ò-Ó). + * if one of the alleles is deleted ('-'). * T/-/CCTA/G * * No-variation @@ -125,7 +125,7 @@ public class VariantContext { * * Named variant * Applies to insertion/deletion polymorphisms of longer sequence features, such as retroposon - * dimorphism for Alu or line elements. These variations frequently include a deletion Ò-Ó indicator + * dimorphism for Alu or line elements. These variations frequently include a deletion '-' indicator * for the absent allele. * (alu) / - *