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Changed " to ' to stop the 

[javadoc] /humgen/gsa-scr1/chartl/sting/java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java:99: warning: unmappable character for encoding ASCII
  [javadoc]      *   if one of the alleles is deleted (?-?).

warnings on compile.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2703 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2010-01-27 15:23:55 +00:00
parent 40c242d2b8
commit ed9b7edee3
1 changed files with 3 additions and 3 deletions
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6
java/src/org/broadinstitute/sting/oneoffprojects/variantcontext/VariantContext.java
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@ -94,9 +94,9 @@ public class VariantContext {
*
* Deletion/Insertion Polymorphisms (DIPs)
* Designated using the full sequence of the insertion as one allele, and either a fully
* defined string for the variant allele or a Ò-Ó character to specify the deleted allele.
* defined string for the variant allele or a '-' character to specify the deleted allele.
* This class will be assigned to a variation if the variation alleles are of different lengths or
* if one of the alleles is deleted (Ò-Ó).
* if one of the alleles is deleted ('-').
* T/-/CCTA/G
*
* No-variation
@ -125,7 +125,7 @@ public class VariantContext {
*
* Named variant
* Applies to insertion/deletion polymorphisms of longer sequence features, such as retroposon
* dimorphism for Alu or line elements. These variations frequently include a deletion Ò-Ó indicator
* dimorphism for Alu or line elements. These variations frequently include a deletion '-' indicator
* for the absent allele.
* (alu) / -
*