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Only run UG in the bundle for chr20

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Eric Banks 2012-10-30 15:09:46 -04:00
parent e1e480a0b9
commit eccb76c304
1 changed files with 1 additions and 0 deletions
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public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala
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@ -317,6 +317,7 @@ class GATKResourcesBundle extends QScript {
class UG(@Input bam: File, @Input ref: File, @Input outVCF: File) extends UnifiedGenotyper with UNIVERSAL_GATK_ARGS { class UG(@Input bam: File, @Input ref: File, @Input outVCF: File) extends UnifiedGenotyper with UNIVERSAL_GATK_ARGS {
this.input_file = List(bam) this.input_file = List(bam)
this.reference_sequence = ref this.reference_sequence = ref
this.intervalsString ++= List("20");
this.out = outVCF this.out = outVCF
} }