diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala index 951e380c3..24ab50451 100755 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala @@ -317,6 +317,7 @@ class GATKResourcesBundle extends QScript { class UG(@Input bam: File, @Input ref: File, @Input outVCF: File) extends UnifiedGenotyper with UNIVERSAL_GATK_ARGS { this.input_file = List(bam) this.reference_sequence = ref + this.intervalsString ++= List("20"); this.out = outVCF }