Only run UG in the bundle for chr20

2012-10-30 15:09:46 -04:00 · 2012-10-30 15:09:46 -04:00 · eccb76c304
parent e1e480a0b9
commit eccb76c304
1 changed files with 1 additions and 0 deletions
--- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala
@ -317,6 +317,7 @@ class GATKResourcesBundle extends QScript {
  class UG(@Input bam: File, @Input ref: File, @Input outVCF: File) extends UnifiedGenotyper with UNIVERSAL_GATK_ARGS {
    this.input_file = List(bam)
    this.reference_sequence = ref
+    this.intervalsString ++= List("20");
    this.out = outVCF
  }