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remove unit test for VCF writer, it's not applicable now that we produce only VCF4. Guillermo, it's up to you if you want to adapt this or remove it. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3803 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-07-16 14:33:25 +00:00
parent b29eda83bb
commit ec94cfdf05
1 changed files with 6 additions and 2 deletions
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8
java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java
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@ -34,8 +34,12 @@ public class VCFWriterUnitTest extends BaseTest {
GenomeLocParser.setupRefContigOrdering(seq); GenomeLocParser.setupRefContigOrdering(seq);
} }
/** test, using the writer and reader, that we can output and input a VCF file without problems */
@Test @Test
public void emptyTest() {
}
/** test, using the writer and reader, that we can output and input a VCF file without problems */
//@Test
public void testBasicWriteAndRead() { public void testBasicWriteAndRead() {
VCFHeader header = createFakeHeader(metaData,additionalColumns); VCFHeader header = createFakeHeader(metaData,additionalColumns);
VCFWriter writer = new VCFWriter(fakeVCFFile); VCFWriter writer = new VCFWriter(fakeVCFFile);
@ -53,7 +57,7 @@ public class VCFWriterUnitTest extends BaseTest {
Assert.assertEquals(2,counter); Assert.assertEquals(2,counter);
reader.close(); reader.close();
new File(fakeVCFFile + TribbleRMDTrackBuilder.linearIndexExtension).delete(); new File(fakeVCFFile + TribbleRMDTrackBuilder.linearIndexExtension).delete();
fakeVCFFile.delete(); //fakeVCFFile.delete();
} }
/** /**