First implementation of the Sliding Window

Browse Source

This is the first attempt on the sliding window approach to reduce the memory footprint and increase performance of the ReduceReads walker.
The sliding window creates a running consensus as it traverses the reads without saving them all in memory. It also generalizes the treatment of variable regions.

...

This commit is contained in:

Mauricio Carneiro 2011-08-12 22:46:44 -04:00

parent ed2df49743

commit ec6b1731e8

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

Show Stats Download Patch File Download Diff File Expand all files Collapse all files

Diff Content Not Available