From ec1cfe67329c43afe916be4816af3b5af23f27c3 Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Wed, 16 Jan 2013 15:05:49 -0500 Subject: [PATCH] Oops, forgot to add 1 of my files --- .../variant/utils/BaseUtilsUnitTest.java | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/public/java/test/org/broadinstitute/variant/utils/BaseUtilsUnitTest.java b/public/java/test/org/broadinstitute/variant/utils/BaseUtilsUnitTest.java index 4f918f718..37627204f 100644 --- a/public/java/test/org/broadinstitute/variant/utils/BaseUtilsUnitTest.java +++ b/public/java/test/org/broadinstitute/variant/utils/BaseUtilsUnitTest.java @@ -53,11 +53,11 @@ public class BaseUtilsUnitTest extends BaseTest { @Test public void testConvertIUPACtoN() { - checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'A', 'A', 'A'}, false), new byte[]{'A', 'A', 'A'}); - checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'W', 'A', 'A'}, false), new byte[]{'N', 'A', 'A'}); - checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'A', 'M', 'A'}, false), new byte[]{'A', 'N', 'A'}); - checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'A', 'A', 'K'}, false), new byte[]{'A', 'A', 'N'}); - checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'M', 'M', 'M'}, false), new byte[]{'N', 'N', 'N'}); + checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'A', 'A', 'A'}, false, false), new byte[]{'A', 'A', 'A'}); + checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'W', 'A', 'A'}, false, false), new byte[]{'N', 'A', 'A'}); + checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'A', 'M', 'A'}, false, false), new byte[]{'A', 'N', 'A'}); + checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'A', 'A', 'K'}, false, false), new byte[]{'A', 'A', 'N'}); + checkBytesAreEqual(BaseUtils.convertIUPACtoN(new byte[]{'M', 'M', 'M'}, false, false), new byte[]{'N', 'N', 'N'}); } private void checkBytesAreEqual(final byte[] b1, final byte[] b2) {