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Message "script failed" moved to the correct place in the code 

GSA-719 fixed
This commit is contained in:
Tad Jordan 2013-02-04 13:40:40 -05:00
parent 79ef41e7b1
commit eb847fa102
1 changed files with 3 additions and 2 deletions
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5
public/scala/src/org/broadinstitute/sting/queue/QCommandLine.scala
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@ -113,6 +113,7 @@ class QCommandLine extends CommandLineProgram with Logging {
def execute = {
var success = false
var result = 1
var functionsAndStatusSize = 0
try {
ClassFieldCache.parsingEngine = this.parser
@ -176,8 +177,7 @@ class QCommandLine extends CommandLineProgram with Logging {
val scriptFunctions = functionsAndStatus.filterKeys(f => script.functions.contains(f))
script.onExecutionDone(scriptFunctions, success)
}
logger.info("Script %s with %d total jobs".format(if (success) "completed successfully" else "failed", functionsAndStatus.size))
functionsAndStatusSize = functionsAndStatus.size
// write the final complete job report
logger.info("Writing final jobs report...")
@ -207,6 +207,7 @@ class QCommandLine extends CommandLineProgram with Logging {
}
}
}
logger.info("Script %s with %d total jobs".format(if (success) "completed successfully" else "failed", functionsAndStatusSize))
result
}