From eb664ae287a78514daa15ce625637f90013c9c6c Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 2 Sep 2009 02:17:50 +0000
Subject: [PATCH] Added VariantFiltrationWalker to GATK early release.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1502 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/GenomeAnalysisTK.xml | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml
index fdd23fc32..92e79f5cc 100644
--- a/packages/GenomeAnalysisTK.xml
+++ b/packages/GenomeAnalysisTK.xml
@@ -20,6 +20,17 @@
     <class>org.broadinstitute.sting.gatk.walkers.indels.IntervalMergerWalker</class>
     <class>org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker</class>
     <class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class>
+    <!-- Variant filtration -->
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VariantFiltrationWalker</class>
+    <!-- And the filters -->
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.IVFSecondaryBases</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECFisherStrand</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECAlleleBalance</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECDepthOfCoverage</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECLodThreshold</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECMappingQualityZero</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECIndelArtifact</class>
+    <class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECClusteredSnps</class>
   </dependencies>
   <resources>
     <file>java/src/org/broadinstitute/sting/gatk/walkers/CountReadsWalker.java</file>