diff --git a/packages/GenomeAnalysisTK.xml b/packages/GenomeAnalysisTK.xml index fdd23fc32..92e79f5cc 100644 --- a/packages/GenomeAnalysisTK.xml +++ b/packages/GenomeAnalysisTK.xml @@ -20,6 +20,17 @@ org.broadinstitute.sting.gatk.walkers.indels.IntervalMergerWalker org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker + + org.broadinstitute.sting.playground.gatk.walkers.variants.VariantFiltrationWalker + + org.broadinstitute.sting.playground.gatk.walkers.variants.IVFSecondaryBases + org.broadinstitute.sting.playground.gatk.walkers.variants.VECFisherStrand + org.broadinstitute.sting.playground.gatk.walkers.variants.VECAlleleBalance + org.broadinstitute.sting.playground.gatk.walkers.variants.VECDepthOfCoverage + org.broadinstitute.sting.playground.gatk.walkers.variants.VECLodThreshold + org.broadinstitute.sting.playground.gatk.walkers.variants.VECMappingQualityZero + org.broadinstitute.sting.playground.gatk.walkers.variants.VECIndelArtifact + org.broadinstitute.sting.playground.gatk.walkers.variants.VECClusteredSnps java/src/org/broadinstitute/sting/gatk/walkers/CountReadsWalker.java