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Added VariantFiltrationWalker to GATK early release. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1502 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2009-09-02 02:17:50 +00:00
parent 1ada085970
commit eb664ae287
1 changed files with 11 additions and 0 deletions
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11
packages/GenomeAnalysisTK.xml
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@ -20,6 +20,17 @@
<class>org.broadinstitute.sting.gatk.walkers.indels.IntervalMergerWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class>
<!-- Variant filtration -->
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VariantFiltrationWalker</class>
<!-- And the filters -->
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.IVFSecondaryBases</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECFisherStrand</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECAlleleBalance</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECDepthOfCoverage</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECLodThreshold</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECMappingQualityZero</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECIndelArtifact</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.variants.VECClusteredSnps</class>
</dependencies>
<resources>
<file>java/src/org/broadinstitute/sting/gatk/walkers/CountReadsWalker.java</file>