From eb1fa4bff3daf8a6be9a4c055250d9a1c2af6e77 Mon Sep 17 00:00:00 2001 From: corin Date: Fri, 24 Sep 2010 21:07:09 +0000 Subject: [PATCH] changes an argument to an output so I can use it to track dependencies in queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4347 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/varianteval/VariantEvalWalker.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java index 11c9bf0b7..84f905e42 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java @@ -188,7 +188,7 @@ public class VariantEvalWalker extends RodWalker { @Argument(shortName="reportType", fullName="reportType", doc="If provided, set the template type", required=false) protected VE2ReportFactory.VE2TemplateType reportType = VE2ReportFactory.defaultReportFormat; - @Argument(shortName="reportLocation", fullName="reportLocation", doc="If provided, set the base file for reports (Required for output formats with more than one file per analysis)", required=false) + @Output(shortName="reportLocation", fullName="reportLocation", doc="If provided, set the base file for reports (Required for output formats with more than one file per analysis)", required=false) protected File outputLocation = null; @Argument(shortName="nSamples", fullName="nSamples", doc="If provided, analyses that need the number of samples in an eval track that has no genotype information will receive this number as the number of samples", required=false)