diff --git a/public/java/src/org/broadinstitute/variant/variantcontext/VariantContextUtils.java b/public/java/src/org/broadinstitute/variant/variantcontext/VariantContextUtils.java index b07040748..0a848fba1 100644 --- a/public/java/src/org/broadinstitute/variant/variantcontext/VariantContextUtils.java +++ b/public/java/src/org/broadinstitute/variant/variantcontext/VariantContextUtils.java @@ -878,6 +878,7 @@ public class VariantContextUtils { } private static void mergeGenotypes(GenotypesContext mergedGenotypes, VariantContext oneVC, AlleleMapper alleleMapping, boolean uniqifySamples) { + //TODO: should we add a check for cases when the genotypeMergeOption is REQUIRE_UNIQUE for ( Genotype g : oneVC.getGenotypes() ) { String name = mergedSampleName(oneVC.getSource(), g.getSampleName(), uniqifySamples); if ( ! mergedGenotypes.containsSample(name) ) {