From ea8c8573d2e8f37a7b585c6479b9d5016431f40e Mon Sep 17 00:00:00 2001 From: Mauricio Carneiro Date: Thu, 10 Jan 2013 18:15:23 -0500 Subject: [PATCH] Fixing ParseLicense script for scala syntax - Scala allows package objects in its syntax, so the script needs to be aware of that and not add "*/" every time it sees it. GSATDG-5 --- .../src/org/broadinstitute/sting/queue/util/DoC/package.scala | 4 ---- 1 file changed, 4 deletions(-) diff --git a/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala b/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala index ac24e3744..46f59baab 100644 --- a/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala +++ b/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala @@ -33,10 +33,6 @@ import org.broadinstitute.sting.commandline.{Input, Gather, Output} import org.broadinstitute.sting.queue.function.CommandLineFunction import org.broadinstitute.sting.gatk.walkers.coverage.CoverageUtils -*/ - -*/ - package object DoC { class DoC(val bams: List[File], val DoC_output: File, val countType: CoverageUtils.CountPileupType, val MAX_DEPTH: Int, val minMappingQuality: Int, val minBaseQuality: Int, val scatterCountInput: Int, val START_BIN: Int, val NUM_BINS: Int, val minCoverageCalcs: Seq[Int]) extends CommandLineGATK with ScatterGatherableFunction { val DOC_OUTPUT_SUFFIX: String = ".sample_interval_summary"