diff --git a/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala b/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala index ac24e3744..46f59baab 100644 --- a/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala +++ b/public/scala/src/org/broadinstitute/sting/queue/util/DoC/package.scala @@ -33,10 +33,6 @@ import org.broadinstitute.sting.commandline.{Input, Gather, Output} import org.broadinstitute.sting.queue.function.CommandLineFunction import org.broadinstitute.sting.gatk.walkers.coverage.CoverageUtils -*/ - -*/ - package object DoC { class DoC(val bams: List[File], val DoC_output: File, val countType: CoverageUtils.CountPileupType, val MAX_DEPTH: Int, val minMappingQuality: Int, val minBaseQuality: Int, val scatterCountInput: Int, val START_BIN: Int, val NUM_BINS: Int, val minCoverageCalcs: Seq[Int]) extends CommandLineGATK with ScatterGatherableFunction { val DOC_OUTPUT_SUFFIX: String = ".sample_interval_summary"