From ea2426dcd0e40c2c51aaefe40009344966bf6642 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 25 Jun 2009 15:09:53 +0000
Subject: [PATCH] one more change needed to commit

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1093 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/utils/Utils.java | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/java/src/org/broadinstitute/sting/utils/Utils.java b/java/src/org/broadinstitute/sting/utils/Utils.java
index ed958131c..179fd3122 100755
--- a/java/src/org/broadinstitute/sting/utils/Utils.java
+++ b/java/src/org/broadinstitute/sting/utils/Utils.java
@@ -176,6 +176,19 @@ public class Utils {
         return new String(basesAsbytes);
     }
 
+    public static boolean is454Read(SAMRecord read, SAMFileHeader header) {
+        Object readGroupAttr = read.getAttribute("RG");
+        if ( readGroupAttr != null ) {
+            SAMReadGroupRecord readGroup = header.getReadGroup(readGroupAttr.toString());
+            if ( readGroup != null ) {
+            Object readPlatformAttr = readGroup.getAttribute("PL");
+            if ( readPlatformAttr != null )
+                return readPlatformAttr.toString().toUpperCase().contains("454");
+            }
+        }
+        return false;
+    }
+
     private static final Map<Integer, String> readFlagNames
             = new HashMap<Integer, String>();