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add wait id for 454 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1678 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-09-22 01:41:58 +00:00
parent 5ce42cbab3
commit e9eeed8c6f
1 changed files with 1 additions and 1 deletions
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2
perl/1kgScripts/runPilot2Pipeline.pl
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@ -58,7 +58,7 @@ foreach my $sample (@samples) {
my $inputBam454 = "$inputDir/$sample.pilot2.454.bam";
my $outputHead454 = "$outputDir/$sample.454";
call("-I $inputBam454", $outputHead454, $queue, $sting, $dry, undef, $sample, $badsnpsSLX, $DoC_454{$sample}, $MQ_hash{"454"});
call("-I $inputBam454", $outputHead454, $queue, $sting, $dry, "$outputBamSLX.cleaner.*", $sample, $badsnpsSLX, $DoC_454{$sample}, $MQ_hash{"454"});
my $outputHead = "$outputDir/$sample.SOLID_454";
call("-I $outputBamSOLID -I $inputBam454", $outputHead, $queue, $sting, $dry, "$outputBamSOLID.cleaner.*", $sample, $badsnpsSOLID, $DoC_454solid{$sample}, $MQ_hash{"454SOLID"});