From e9e53f68abf016aa50441e6c3f4316d1f1d5f2bc Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sat, 27 Mar 2010 17:41:24 +0000
Subject: [PATCH] Filter lists can now end with .list or .txt.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3084 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/filters/ReadGroupBlackListFilter.java            | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java b/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java
index 139df5c05..28102852c 100644
--- a/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java
+++ b/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java
@@ -53,7 +53,7 @@ public class ReadGroupBlackListFilter implements SamRecordFilter {
     }
 
     private void addFilter(Map<String, Collection<String>> filters, String filter, File parentFile, int parentLineNum) {
-        if (filter.toLowerCase().endsWith(".txt")) {
+        if (filter.toLowerCase().endsWith(".list") || filter.toLowerCase().endsWith(".txt")) {
             File file = new File(filter);
             try {
                 int lineNum = 0;