diff --git a/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java b/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java index 139df5c05..28102852c 100644 --- a/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java +++ b/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java @@ -53,7 +53,7 @@ public class ReadGroupBlackListFilter implements SamRecordFilter { } private void addFilter(Map> filters, String filter, File parentFile, int parentLineNum) { - if (filter.toLowerCase().endsWith(".txt")) { + if (filter.toLowerCase().endsWith(".list") || filter.toLowerCase().endsWith(".txt")) { File file = new File(filter); try { int lineNum = 0;