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Rename 'verbose' argument to 'debug_file'. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5657 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2011-04-18 03:17:13 +00:00
parent e28fc21642
commit e97a5ca161
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java
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@ -60,7 +60,7 @@ public class UnifiedGenotyper extends LocusWalker<VariantCallContext, UnifiedGen
@Output(doc="File to which variants should be written",required=true)
protected VCFWriter writer = null;
@Argument(fullName = "verbose_mode", shortName = "verbose", doc = "File to print all of the annotated and detailed debugging output", required = false)
@Argument(fullName = "debug_file", shortName = "debug_file", doc = "File to print all of the annotated and detailed debugging output", required = false)
protected PrintStream verboseWriter = null;
@Argument(fullName = "metrics_file", shortName = "metrics", doc = "File to print any relevant callability metrics output", required = false)