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Removed experimental recalibration covariates. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2631 348d0f76-0448-11de-a6fe-93d51630548a
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kshakir 2010-01-19 21:29:43 +00:00
parent c98df0a862
commit e936cbff1b
1 changed files with 0 additions and 6 deletions
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6
packages/GATK-GSA-Pipeline.xml
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@ -15,12 +15,6 @@
<dependencies>
<!-- Filters -->
<package>org.broadinstitute.sting.gatk.filters</package>
<!-- Recalibration Covariates -->
<class>org.broadinstitute.sting.gatk.walkers.recalibration.PositionCovariate</class>
<class>org.broadinstitute.sting.gatk.walkers.recalibration.MinimumNQSCovariate</class>
<class>org.broadinstitute.sting.gatk.walkers.recalibration.MappingQualityCovariate</class>
<class>org.broadinstitute.sting.gatk.walkers.recalibration.PrimerRoundCovariate</class>
<class>org.broadinstitute.sting.gatk.walkers.recalibration.HomopolymerCovariate</class>
<!-- From playground -->
<class>org.broadinstitute.sting.playground.gatk.walkers.varianteval.VariantEvalWalker</class>
<class>org.broadinstitute.sting.playground.gatk.walkers.contamination.FindContaminatingReadGroupsWalker</class>