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Updated package for early access 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2158 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2009-11-25 18:08:12 +00:00
parent 6ff8526592
commit e8bb88e33d
1 changed files with 12 additions and 11 deletions
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23
packages/GenomeAnalysisTK.xml
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@ -22,19 +22,20 @@
<class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class> <class>org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperWalker</class> <class>org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperWalker</class>
<class>org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker</class> <class>org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker</class>
<!-- Unified genotyper -->
<class>org.broadinstitute.sting.gatk.walkers.genotyper.UnifiedGenotyper</class>
<!-- Variant filtration --> <!-- Variant filtration -->
<class>org.broadinstitute.sting.gatk.walkers.filters.VariantFiltrationWalker</class> <class>org.broadinstitute.sting.gatk.walkers.filters.VariantFiltrationWalker</class>
<!-- Single sample genotyper --> <!-- Variant annotator -->
<class>org.broadinstitute.sting.gatk.walkers.genotyper.UnifiedGenotyper</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.VariantAnnotator</class>
<!-- And the filters --> <!-- And the annotations -->
<class>org.broadinstitute.sting.gatk.walkers.filters.IVFSecondaryBases</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.AlleleBalance</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECFisherStrand</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.DepthOfCoverage</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECAlleleBalance</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.FisherStrand</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECDepthOfCoverage</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.HomopolymerRun</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECLodThreshold</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.MappingQualityZero</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECMappingQualityZero</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.RMSMappingQuality</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECIndelArtifact</class> <class>org.broadinstitute.sting.gatk.walkers.annotator.SpanningDeletions</class>
<class>org.broadinstitute.sting.gatk.walkers.filters.VECClusteredSnps</class>
</dependencies> </dependencies>
<resources> <resources>
<!-- GATK sample code and build scripts --> <!-- GATK sample code and build scripts -->