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Make unpackList public static so that Doug can use it in the scatter/gather framework. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1665 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-09-21 15:32:49 +00:00
parent 7b627fd622
commit e7f44ada98
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/CommandLineExecutable.java
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@ -136,7 +136,7 @@ public abstract class CommandLineExecutable extends CommandLineProgram {
* @param argCollection Collection of arguments to preprocess. * @param argCollection Collection of arguments to preprocess.
*/ */
private void processArguments( GATKArgumentCollection argCollection ) { private void processArguments( GATKArgumentCollection argCollection ) {
argCollection.samFiles = unpackReads( argCollection.samFiles ); argCollection.samFiles = unpackList( argCollection.samFiles );
} }
/** /**
@ -147,7 +147,7 @@ public abstract class CommandLineExecutable extends CommandLineProgram {
* *
* @return * @return
*/ */
private List<File> unpackReads( List<File> inputFiles ) { public static List<File> unpackList( List<File> inputFiles ) {
List<File> unpackedReads = new ArrayList<File>(); List<File> unpackedReads = new ArrayList<File>();
for( File inputFile: inputFiles ) { for( File inputFile: inputFiles ) {
if (inputFile.getName().endsWith(".list") ) { if (inputFile.getName().endsWith(".list") ) {