From e7f44ada98a98bf784fb27529e35b70c4ca4dc69 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 21 Sep 2009 15:32:49 +0000
Subject: [PATCH] Make unpackList public static so that Doug can use it in the
 scatter/gather framework.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1665 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../org/broadinstitute/sting/gatk/CommandLineExecutable.java  | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/CommandLineExecutable.java b/java/src/org/broadinstitute/sting/gatk/CommandLineExecutable.java
index 5b44248cb..55ac87b03 100644
--- a/java/src/org/broadinstitute/sting/gatk/CommandLineExecutable.java
+++ b/java/src/org/broadinstitute/sting/gatk/CommandLineExecutable.java
@@ -136,7 +136,7 @@ public abstract class CommandLineExecutable extends CommandLineProgram {
      * @param argCollection Collection of arguments to preprocess.
      */
     private void processArguments( GATKArgumentCollection argCollection ) {
-        argCollection.samFiles = unpackReads( argCollection.samFiles );
+        argCollection.samFiles = unpackList( argCollection.samFiles );
     }
 
     /**
@@ -147,7 +147,7 @@ public abstract class CommandLineExecutable extends CommandLineProgram {
      *
      * @return
      */
-    private List<File> unpackReads( List<File> inputFiles ) {
+    public static List<File> unpackList( List<File> inputFiles ) {
         List<File> unpackedReads = new ArrayList<File>();
         for( File inputFile: inputFiles ) {
             if (inputFile.getName().endsWith(".list") ) {