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Register the depricated walkers as depricated starting in v2.2 so that users get a helpful error message

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Eric Banks 2012-08-28 10:19:18 -04:00
parent 67d348a31d
commit e74c527d47
1 changed files with 2 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisEngine.java
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@ -283,6 +283,8 @@ public class GenomeAnalysisEngine {
static { static {
deprecatedGATKWalkers.put("CountCovariates", "2.0"); deprecatedGATKWalkers.put("CountCovariates", "2.0");
deprecatedGATKWalkers.put("TableRecalibration", "2.0"); deprecatedGATKWalkers.put("TableRecalibration", "2.0");
deprecatedGATKWalkers.put("AlignmentWalker", "2.2");
deprecatedGATKWalkers.put("CountBestAlignments", "2.2");
} }
/** /**