zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

bug fix, but important 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@437 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-04-15 21:07:20 +00:00
parent feebd8cd55
commit e70aecf518
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
View File

@ -32,7 +32,7 @@ public class SAMDataSource implements SimpleDataSource {
protected static Logger logger = Logger.getLogger(SAMDataSource.class); protected static Logger logger = Logger.getLogger(SAMDataSource.class);
// are we set to locus mode or read mode for dividing // are we set to locus mode or read mode for dividing
private boolean locusMode = false; private boolean locusMode = true;
// How strict should we be with SAM/BAM parsing? // How strict should we be with SAM/BAM parsing?
protected SAMFileReader.ValidationStringency strictness = SAMFileReader.ValidationStringency.STRICT; protected SAMFileReader.ValidationStringency strictness = SAMFileReader.ValidationStringency.STRICT;