From e70aecf518584b2eef6c07f3ec3ad21ee29cd457 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 15 Apr 2009 21:07:20 +0000
Subject: [PATCH] bug fix, but important

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@437 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/dataSources/simpleDataSources/SAMDataSource.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java b/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
index 573c097f5..68bfdabf5 100755
--- a/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
+++ b/java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
@@ -32,7 +32,7 @@ public class SAMDataSource implements SimpleDataSource {
     protected static Logger logger = Logger.getLogger(SAMDataSource.class);
 
     // are we set to locus mode or read mode for dividing
-    private boolean locusMode = false;
+    private boolean locusMode = true;
 
     // How strict should we be with SAM/BAM parsing?
     protected SAMFileReader.ValidationStringency strictness = SAMFileReader.ValidationStringency.STRICT;