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bug fix, but important 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@437 348d0f76-0448-11de-a6fe-93d51630548a
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aaron 2009-04-15 21:07:20 +00:00
parent feebd8cd55
commit e70aecf518
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/SAMDataSource.java
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@ -32,7 +32,7 @@ public class SAMDataSource implements SimpleDataSource {
protected static Logger logger = Logger.getLogger(SAMDataSource.class);
// are we set to locus mode or read mode for dividing
private boolean locusMode = false;
private boolean locusMode = true;
// How strict should we be with SAM/BAM parsing?
protected SAMFileReader.ValidationStringency strictness = SAMFileReader.ValidationStringency.STRICT;