diff --git a/settings/repository/edu.mit.broad/picard-private-parts-2125.jar b/settings/repository/edu.mit.broad/picard-private-parts-2125.jar
deleted file mode 100644
index 70c589572..000000000
Binary files a/settings/repository/edu.mit.broad/picard-private-parts-2125.jar and /dev/null differ
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-2164.jar b/settings/repository/edu.mit.broad/picard-private-parts-2164.jar
new file mode 100644
index 000000000..4465f91f5
Binary files /dev/null and b/settings/repository/edu.mit.broad/picard-private-parts-2164.jar differ
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-2125.xml b/settings/repository/edu.mit.broad/picard-private-parts-2164.xml
similarity index 58%
rename from settings/repository/edu.mit.broad/picard-private-parts-2125.xml
rename to settings/repository/edu.mit.broad/picard-private-parts-2164.xml
index 0758c94cd..6a22ea2c3 100644
--- a/settings/repository/edu.mit.broad/picard-private-parts-2125.xml
+++ b/settings/repository/edu.mit.broad/picard-private-parts-2164.xml
@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="edu.mit.broad" module="picard-private-parts" revision="2125" status="integration" publication="20111024162900" />
+    <info organisation="edu.mit.broad" module="picard-private-parts" revision="2164" status="integration" publication="20111229115300" />
 </ivy-module>
diff --git a/settings/repository/net.sf/picard-1.57.1030.xml b/settings/repository/net.sf/picard-1.57.1030.xml
deleted file mode 100644
index 50e2db846..000000000
--- a/settings/repository/net.sf/picard-1.57.1030.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="picard" revision="1.57.1030" status="release" />
-</ivy-module>
diff --git a/settings/repository/net.sf/picard-1.57.1030.jar b/settings/repository/net.sf/picard-1.58.1057.jar
similarity index 88%
rename from settings/repository/net.sf/picard-1.57.1030.jar
rename to settings/repository/net.sf/picard-1.58.1057.jar
index 0ce2cb0dc..4a82a3058 100644
Binary files a/settings/repository/net.sf/picard-1.57.1030.jar and b/settings/repository/net.sf/picard-1.58.1057.jar differ
diff --git a/settings/repository/net.sf/picard-1.58.1057.xml b/settings/repository/net.sf/picard-1.58.1057.xml
new file mode 100644
index 000000000..15c5b5620
--- /dev/null
+++ b/settings/repository/net.sf/picard-1.58.1057.xml
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="picard" revision="1.58.1057" status="release" />
+</ivy-module>
diff --git a/settings/repository/net.sf/sam-1.57.1030.xml b/settings/repository/net.sf/sam-1.57.1030.xml
deleted file mode 100644
index a5dfe0718..000000000
--- a/settings/repository/net.sf/sam-1.57.1030.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="sam" revision="1.57.1030" status="release" />
-</ivy-module>
diff --git a/settings/repository/net.sf/sam-1.57.1030.jar b/settings/repository/net.sf/sam-1.58.1057.jar
similarity index 91%
rename from settings/repository/net.sf/sam-1.57.1030.jar
rename to settings/repository/net.sf/sam-1.58.1057.jar
index 2404c9986..804e21b61 100644
Binary files a/settings/repository/net.sf/sam-1.57.1030.jar and b/settings/repository/net.sf/sam-1.58.1057.jar differ
diff --git a/settings/repository/net.sf/sam-1.58.1057.xml b/settings/repository/net.sf/sam-1.58.1057.xml
new file mode 100644
index 000000000..4f0dfe44e
--- /dev/null
+++ b/settings/repository/net.sf/sam-1.58.1057.xml
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="sam" revision="1.58.1057" status="release" />
+</ivy-module>