From e6d038067b21eb71156e22cc155f1604b242afd2 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sun, 17 Oct 2010 04:41:42 +0000
Subject: [PATCH] cleanup the temp index too

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4512 348d0f76-0448-11de-a6fe-93d51630548a
---
 perl/liftOverVCF.pl | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/perl/liftOverVCF.pl b/perl/liftOverVCF.pl
index e02ba98a8..5a34594d1 100755
--- a/perl/liftOverVCF.pl
+++ b/perl/liftOverVCF.pl
@@ -67,5 +67,7 @@ system($cmd);
 # clean up
 unlink $unsorted_vcf;
 unlink $sorted_vcf;
+my $sorted_index = "$sorted_vcf.idx";
+unlink $sorted_index;
 
 print "\nDone!\n";