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Fixed >= vs. > test leading to failure to tolerate dynamic indexes that are created at *exactly* the instant the output VCF is closed too 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4555 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-10-22 16:11:14 +00:00
parent 72c5b75460
commit e6b008f87c
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/RMDTrackBuilder.java
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@ -284,7 +284,7 @@ public class RMDTrackBuilder extends PluginManager<FeatureCodec> {
Index index = IndexFactory.loadIndex(indexFile.getAbsolutePath()); Index index = IndexFactory.loadIndex(indexFile.getAbsolutePath());
// check if the file is up-to date (filestamp and version check) // check if the file is up-to date (filestamp and version check)
if (index.isCurrentVersion() && indexFile.lastModified() > inputFile.lastModified()) if (index.isCurrentVersion() && indexFile.lastModified() >= inputFile.lastModified())
return index; return index;
else if (indexFile.lastModified() < inputFile.lastModified()) else if (indexFile.lastModified() < inputFile.lastModified())
logger.warn("Index file " + indexFile + " is out of date (index older than input file), deleting and updating the index file"); logger.warn("Index file " + indexFile + " is out of date (index older than input file), deleting and updating the index file");