From e6b008f87c66a0525616b33f5140d0d161f5e63c Mon Sep 17 00:00:00 2001 From: depristo Date: Fri, 22 Oct 2010 16:11:14 +0000 Subject: [PATCH] Fixed >= vs. > test leading to failure to tolerate dynamic indexes that are created at *exactly* the instant the output VCF is closed too git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4555 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/refdata/tracks/builders/RMDTrackBuilder.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/RMDTrackBuilder.java b/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/RMDTrackBuilder.java index 751e60cc0..feba147c9 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/RMDTrackBuilder.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/tracks/builders/RMDTrackBuilder.java @@ -284,7 +284,7 @@ public class RMDTrackBuilder extends PluginManager { Index index = IndexFactory.loadIndex(indexFile.getAbsolutePath()); // check if the file is up-to date (filestamp and version check) - if (index.isCurrentVersion() && indexFile.lastModified() > inputFile.lastModified()) + if (index.isCurrentVersion() && indexFile.lastModified() >= inputFile.lastModified()) return index; else if (indexFile.lastModified() < inputFile.lastModified()) logger.warn("Index file " + indexFile + " is out of date (index older than input file), deleting and updating the index file");