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With Khalid's implicit approval, I have removed this line that overrides the memory limit of the VCF-gathering function, so that the inherited limit remains

This commit is contained in:
Menachem Fromer 2011-10-18 14:47:39 -04:00
parent 0de8550f17
commit e5fc828546
1 changed files with 0 additions and 2 deletions
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2
public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala
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@ -36,8 +36,6 @@ class VcfGatherFunction extends CombineVariants with GatherFunction {
private lazy val originalGATK = this.originalFunction.asInstanceOf[CommandLineGATK] private lazy val originalGATK = this.originalFunction.asInstanceOf[CommandLineGATK]
override def freezeFieldValues { override def freezeFieldValues {
this.memoryLimit = Some(1)
this.jarFile = this.originalGATK.jarFile this.jarFile = this.originalGATK.jarFile
this.reference_sequence = this.originalGATK.reference_sequence this.reference_sequence = this.originalGATK.reference_sequence
this.intervals = this.originalGATK.intervals this.intervals = this.originalGATK.intervals