From e5fc82854609f90df8be3704e6f3cd5f482b5a91 Mon Sep 17 00:00:00 2001 From: Menachem Fromer Date: Tue, 18 Oct 2011 14:47:39 -0400 Subject: [PATCH] With Khalid's implicit approval, I have removed this line that overrides the memory limit of the VCF-gathering function, so that the inherited limit remains --- .../sting/queue/extensions/gatk/VcfGatherFunction.scala | 2 -- 1 file changed, 2 deletions(-) diff --git a/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala b/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala index d70022147..70046c913 100644 --- a/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala +++ b/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala @@ -36,8 +36,6 @@ class VcfGatherFunction extends CombineVariants with GatherFunction { private lazy val originalGATK = this.originalFunction.asInstanceOf[CommandLineGATK] override def freezeFieldValues { - this.memoryLimit = Some(1) - this.jarFile = this.originalGATK.jarFile this.reference_sequence = this.originalGATK.reference_sequence this.intervals = this.originalGATK.intervals