diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodPicardDbSNP.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodPicardDbSNP.java index 33b7e4d8b..59e1740af 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/rodPicardDbSNP.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodPicardDbSNP.java @@ -252,9 +252,9 @@ public class rodPicardDbSNP implements VariationRod { private static class MyGenomeLoc extends GenomeLoc { private MyGenomeLoc(final KnownVariant knownVariant) { - // GenomeLoc is one-based half-open interval. + // GenomeLoc is one-based closed interval. super(knownVariant.getReferenceSequence(), knownVariant.getSequenceIndex(), knownVariant.getStartPos(), - knownVariant.getEndPos() + 1); + knownVariant.getEndPos()); } }