diff --git a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java index 888dc1e98..1fde8879b 100755 --- a/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java +++ b/public/java/src/org/broadinstitute/sting/utils/variantcontext/VariantContext.java @@ -209,6 +209,7 @@ public class VariantContext implements Feature { // to enable tribble intergrati /** * the complete constructor. Makes a complete VariantContext from its arguments + * This is the only constructor that is able to create indels! DO NOT USE THE OTHER ONES. * * @param source source * @param contig the contig @@ -293,7 +294,7 @@ public class VariantContext implements Feature { // to enable tribble intergrati } /** - * Create a new variant context without genotypes and no Perror, no filters, and no attributes + * Create a new variant context with genotypes but without Perror, filters, and attributes * * @param source source * @param contig the contig