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Forgot to add the note about length normalization to the QD docs

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Eric Banks 2013-01-10 23:34:06 -05:00
parent ff5ac986d8
commit e4b7b1955c
1 changed files with 1 additions and 1 deletions
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protected/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java
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@ -68,7 +68,7 @@ import java.util.List;
import java.util.Map; import java.util.Map;
/** /**
* Variant confidence (from the QUAL field) / unfiltered depth of non-reference samples. * Variant confidence (from the QUAL field) / unfiltered depth of non-reference samples. Note that the QD is also normalized by event length.
* *
* Low scores are indicative of false positive calls and artifacts. Note that QualByDepth requires sequencing * Low scores are indicative of false positive calls and artifacts. Note that QualByDepth requires sequencing
* reads associated with the samples with polymorphic genotypes. * reads associated with the samples with polymorphic genotypes.